limix.plot.manhattan

limix.plot.manhattan(data, colora='#5689AC', colorb='#21334F', pts_kws=None, ax=None)[source]

Produce a manhattan plot.

Parameters

  • data (DataFrame, dict) – DataFrame containing the chromosome, base-pair positions, and p-values.

  • colora (matplotlib color) – Points color of the first group.

  • colorb (matplotlib color) – Points color of the second group.

  • pts_kws (dict, optional) – Keyword arguments forwarded to the matplotlib function used for plotting the points.

  • ax (matplotlib Axes, optional) – The target handle for this figure. If None, the current axes is set.

Example

(Source code, png)

../_images/limix-plot-manhattan-1.png