limix
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Table of contents
Install
I/O module
Quality control
Quantitative trait locus
Variance decomposition
Heritability estimation
Plotting
Command line interface
Statistics
Model
API reference
limix
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Limix’s documentation
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Table of contents
Install
Pip
Conda
I/O module
BIMBAM
BGEN reader
CSV reader
HDF5 reader
NumPy reader
PLINK reader
Quality control
Box-Cox
Dependent columns
Genotype
Impute
Kinship
Normalisation
Quantitative trait locus
Introduction
Statistical test
Single-trait association
Non-normal trait association
Single-trait with interaction
Multi-trait association
Variance decomposition
Single-trait decomposition
Heritability estimation
Plotting
Kinship
Manhattan
Quantile-quantile plot
Command line interface
Introduction
Kinship
Plink BED format
BIMBAM file formats
HDF5
CSV
Image
GWAS
Statistics
Alleles
Chi-square mixture
Ground truth evaluation
Kinship
Likelihood-ratio test
Principal component analysis
P-value correction
Model
Linear Mixed Models
Generalised Linear Mixed Models
Gaussian Process
Generalised Gaussian Process
Covariance
Mean
API reference
I/O module
Quality control
Statistics
Heritability estimation
Variance decomposition
Quantitative trait loci
Plotting & Graphics
Shell utilities
Comments and bugs
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